VISUAL PHASING

Visual phasing is a technique developed by Kathy Johnston that allows to assign DNA segments of three full siblings to all their four grandparents by comparing their crossing-over points.

What are the requirements?

  • autosomal DNA raw data files of the three full siblings (or more) uploaded to GEDmatch
  • multiple 2nd or 3rd cousins on several ancestral lines available for comparison
  • Steven Fox’s automated Excel spreadsheet (available for download at the Visual Phasing working group on Facebook)
  • advanced understanding of genetic genealogy
  • analytical skills and patience

http://geneticgenealogygirl.com/en/2017/12/visual-phasing-of-chromosome-1-updated-version-using-steven-foxs-excel-spreadsheet/

http://geneticgenealogygirl.com/en/2017/06/visual-phasing-of-chromosome-1/

6 Comments

  1. In your article describing the use of Visual Phasing Spreadsheet V2.3, in Section 2.5 Extending segments, you said the following: “It looks like I’m stuck…..” You extended a color combination of a Red and two yellow segments … by changing one of the codes. My question: are you able to also apply that concept to any other areas where that same combination occurs on the same Chromosome?

    Or, can this be done only once on a partular chromosome?

    Can this technique be used on other color code combinations?

    I enjoyed studying your article. Thank you.

    Ted Richardson

    1. Hi Ted,

      I appreciate your feedback, thank you. No, you can make that arbitrary decision of changing the codes only once on the same chromosome. After that the relationship between the codes on this chromosome will be set. However, if the same situation occurs on a different chromosome you can apply this technique again (because every chromosome needs to be visually phased separately).

      1. Thank you, Eleonora.

        To further my understanding, does this arbitrary decision only apply to Red-Yellow-Yellow color combinations… as was the case in your example?

        Thank you, again.

        1. I’m not sure whether I understand what you mean correctly. The arbitrary decision is independent of a certain color code combination. It’s basically one additional step you can make after you have mapped a chromosome as far as you could using logic.

  2. Hello Eleonora,
    Do you have, or know where to get, a list of the starting and ending positions for the 23 chromosomes?

    There must be a scientific answer to this question, but I can not find it.

    I am nearing completion of an almost-automatic 3-sibling Visual Phasing spreadsheet.

    Thank you,

    Ted Richardson

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